@bioimageio

https://xitter.cf/t.co/6u8B2rqi9V

bioimage.io
Joined June 2020
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  • Following12
  • Followers250
5Media
A great week for AI4Life starts today with a workshop + hackathon/uploathon at @uc3m in Madrid. @Daniel_Sage_ from @EPFL_en kickstarted the event with an overview of microscopy image analysis
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Replying to @MaKaefer @AI4LifeTeam @EuroBioImaging
Run Model online and view the results in browser in @FijiSc it’s a beauty. #elmi2024
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🎥 Missed our AI4Life Virtual Pub session? No worries, you can watch it now: ai4life.eurobioimaging.eu/vi… Tools from AI4Life that anyone can use! 🛠️
Euro-BioImaging Virtual Pub. Tools from AI4Life that anyone can use. March 1, 2024, 13:00 CET. Anna Kreshuk, Wei Ouyang, Caterina Fuster-Barcelo, Vera Galinova, from the AI4Life Team

ALT Euro-BioImaging Virtual Pub. Tools from AI4Life that anyone can use. March 1, 2024, 13:00 CET. Anna Kreshuk, Wei Ouyang, Caterina Fuster-Barcelo, Vera Galinova, from the AI4Life Team

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Less than 24h for an exciting exercise that says "Load, use and fine-tune models from @bioimageio using #DL4MicEverywhere... and export them back to the #BioImageModelZoo format to reuse them in @ilastik_team @deepImageJ @Icy_BioImaging let's see how optimistic this can be 😎
AI4Life Team@AI4LifeTeam22 Apr 2024
🔬💻 The @EBItraining virtual course "Microscopy data analysis: machine learning and the BioImage Archive" starts today! The week comes packed with insights into #ZeroCostDL, @BioimageA, AI4Life tools, and more!
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Replying to @imweio
@imweio has introduced the ecosystem built around @bioimageio within AI4Life, including Hypha, BioEngine, the @bioimageio ChatBot... at the Microscopy data analysis @EBItraining course
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Enjoying a fantastic week in Prague! ✨ In one of these photos, you'll catch me showing our incredible new projects, including the 🦒 BioImage.IO ChatBot 🤖, SAMJ 🔎, and more!
CEITEC@CEITEC_Brno19 Apr 2024
#HackPrague24 is underway 💻 this time in Prague! On 15-24 April we are focusing on improving Java-based biomedical image processing SW, in particular Fiji, BigDataViewer, and others 🔍 IT experts, common challenges, and innovation for science!
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Dominik Kutra from @ilastik_team is guiding a practical session on using ilastik for #ImageAnalysis tasks during the @EBItraining course microscopy data analysis. His top tip: For any #ImageAnalysis questions, be sure to check out image.sc! 🖥️🔬
ilastik workflows: load data -> preprocess -> ... Tasks: - Pixel Classification - Object classification - Neural Network Classification - Carving - Boundary-based Segmentation - Tracking

ALT ilastik workflows: load data -> preprocess -> ... Tasks: - Pixel Classification - Object classification - Neural Network Classification - Carving - Boundary-based Segmentation - Tracking

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Day 3 of the @EBItraining virtual course "Microscopy data analysis: ML and the BioImage Archive" is dedicated to AI4Life 🦒. We start with Anna Kreshuk lecturing on @ilastik_team and @bioimageio. She highlights the need to have a shared format for models understood by all tools
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BioImage.IO retweeted
BioImage.IO@bioimageio31 Oct 2023
📢🎉 Announcement! We are proud to introduce you to the BioImage.IO Chatbot 🤖! An #AI-powered assistant augmented by a community knowledge base, for navigating the world of #BioImageAnalysis 📃 Preprint: arxiv.org/abs/2310.18351 (1/9)
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📢🎉 Announcement! We are proud to introduce you to the BioImage.IO Chatbot 🤖! An #AI-powered assistant augmented by a community knowledge base, for navigating the world of #BioImageAnalysis 📃 Preprint: arxiv.org/abs/2310.18351 (1/9)
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more replies
(8/9) We're recruiting early testers to try it out! 📣 If you're keen to help us refine this exciting tool, sign up here 👇 🔗 forms.gle/fEnj68Rxut1VUX1Y8

🤖Early Tester Recruitment for BioImage.IO Chatbot

Introduction: Thank you for your interest in becoming a beta tester for the BioImage.IO Chatbot! We're excited to invite you to join our testing team and help us improve the chatbot's functionality...

docs.google.com
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(9/9) 🙏 Huge thanks to @AI4LifeTeam for their invaluable support! 🇪🇺 AI4Life has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement number 101057970. @REA_research
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📣 We are thrilled to announce the launch of #BioEngine, a cloud-based infrastructure for supercharging AI-powered bioimage analysis 🚀 🔗 ai4life.eurobioimaging.eu/an… @bioimageio
BioEngine: Scalable AI Model Serving. Schema representing the architecture behind BioEngine

ALT BioEngine: Scalable AI Model Serving. Schema representing the architecture behind BioEngine

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We are thrilled to receive the Napari Plugin Accelerator grant from @CZIScience for building plugin infrastructure to support AI models in @napari_imaging! More details: chanzuckerberg.com/science/p…

Building Plugin Infrastructure to Support AI Models

chanzuckerberg.com
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The BioImage Model Zoo is a joint effort by members from @ImJoyTeam @ilastik_team @jug_lab @Prof_Lundberg #deepImageJ @FijiSc #ZeroCostDL4Mic #stardist @QuPath etc. It is currently under development at bioimage.io and we will make a release soon, stay tuned!
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