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Newton, MA
Joined September 2012
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📢 Call for Papers! 🔬
Our “Multiplexed Tissue Imaging” Research Collection in BMC Biomedical Engineering is open for submissions!
📅 Deadline: May 28, 2027
🔗 link.springer.com/collection…
#SpatialBiology #MultiplexedImaging
New Research Topic open in @FrontiersIn Bioinformatics: computational imaging for spatial omics and tissue architecture. Submit by 26 Sep 2026. frontiersin.org/research-top… #SpatialOmics #Bioinformatics
frontiersin.org/journals/bio…
A toolkit for generating virtual brightfield images of histological and immunohistochemical stains from multiplexed data with AI-based channel selection and image enhancement
Jia-Ren Lin retweeted
🚨🚨Paper out!! 🚨🚨
Excited to share our work (Pre-cancer Atlas of High Grade Serous Ovarian Cancer (HGSOC)), now published in @CD_AACR!
aacrjournals.org/cancerdisco…
What if I told you HGSOC often starts in the Fallopian Tube and progresses through precancerous lesions? 1/n
🧵👇
Systematic Benchmarking of High-Throughput Subcellular Spatial Transcriptomics Platforms biorxiv.org/content/10.1101/…
Jia-Ren Lin retweeted
Now in @CD_AACR: Multimodal Spatial Profiling Reveals Immune Suppression & Microenvironment Remodeling in Fallopian Tube Precursors to High-Grade Serous Ovarian Carcinoma - by @TanjinaKader, @JiaRenLin, Clemens Hug, @ronny_drapkin, @SantagataMDPhD, et al. doi.org/10.1158/2159-8290.CD…
Jia-Ren Lin retweeted
Join our Team at Harvard Medical School for an Outstanding Opportunity for Post-doctoral Training in #SpatialBiology Focusing on #Sarcomas - Biological Discovery, Translation Research, Clinical Trials.
POST-DOCTORAL FELLOW IN TRANSLATIONAL CANCER RESEARCH - SARCOMA
To apply, submit your:
· CV
· Cover letter highlighting your research interests and experience
· Contact information for three references
Email to Sandro Santagata, M.D., Ph.D. at [email protected]
Jia-Ren Lin retweeted
A huge day for spatial omics of cancer, tracing the precise origin and evolution of 20 types of cancer, many in 3D, in ~2,000 individuals, with 12 publications @Nature @NatureCancer @NatureMedicine @naturemethods @CommsBio
Collection nature.com/immersive/d42859-…
Jia-Ren Lin retweeted
🚨 Great alternatives to BioRender are now available!!
📢 @NIAIDNews offers a collection of public figures and icons for everyone to use. Check it out at bioart.niaid.nih.gov
Jia-Ren Lin retweeted
There is still time to register for this FREE VIRTUAL SYMPOSIUM on Spatial Biology organized by myself and my colleagues at @naturemethods @naturegenet @NatureBiotech and @nature! Check out the amazing line up!
Please join us for our free Technology Live Virtual Symposium on Spatial Biology this October 29th! natureconferences.streamgo.l… Speakers include Rong Fan, Andrea Radtke, Long Cai, Sarah Teichmann and many more!
systematic evaluation of computational methods for cell segmentation academic.oup.com/bib/article…
Jia-Ren Lin retweeted
Wonderful to be selected for the Best of Cell 2023 - "Multiplexed 3D atlas of state transitions and immune interactions in colorectal cancer" - NCI Human Tumor Atlas Network #HTAN. @CellCellPress.
Congratulations!!! to @JiaRenLin, Shu Wang, Shannon Coy, Yu-An Chen, Clarence Yapp, @madison_a_tyler, Maulik Nariya, @cody_heiser, @KenLauLab, and @sorger_peter, and all of the wonderful members of the HMS Laboratory of Systems Pharmacology (LSP) including Alyce Chen, Raquel Arias-Camison, Zoltan Maliga, Jeremy Muhlich, Juliann Tefft and more for all of their tireless efforts to make this innovative work possible. Very proud to be part of this team!!! @HiTSatHarvard, @BWHPathology, @MassGenBrigham, tissue-atlas.org/
Grateful for the strong support from @NCIHTAN, @Ludwig_Cancer, the Gray Foundation, the David Liposarcoma Research Initiative, @NCIsysbio, and more.
Great way to close 2023! 🥂🎉🥳🍾🪩 More exciting work ahead in the New Year.
Open for submissions: Current advances of computational methods for tissue multiplexed imaging in research and diagnosis FrontBioinf frontiersin.org/researchtopi…
What cannot be seen correctly in 2D visualizations of single-cell ‘omics data?: Cell Systems cell.com/cell-systems/fullte…
Jia-Ren Lin retweeted
In the latest issue! Coordinated cancer chaos dlvr.it/ShKhz7
Thrilled to shared our paper "Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer" sciencedirect.com/science/ar…
Thanks to all the co-authors @sorger_peter, @SantagataLab, Shu Wang, Shannon Coy,Yu-An Chen, Clarence Yapp, Madison Tyler, Maulik Nariya, @KenLauLab and Cody Heiser. Also thanks to all the people in @NCIHTAN and @HiTSatHarvard communities
Special thanks to @JuliannTefft who made a huge push on the final stage of this publication.
In this study, we explored the tissue-level organizations of different histopathological motifs, and spatial correlations of immune and tumor populations. Furthermore, we discussed the potential issues of spatial samples on quantifying different cell types.
Jia-Ren Lin retweeted
Exciting times to be visualizing cancer pathology! It’s our honor to be developing new ways for talented researchers like @sorger_peter and team to continue making break-throughs in understanding, prevention and treatment!
#cancerpathology
#highplextissueimaging
#cancerbiomarkers
You can find me in the line for early access to the ORION platform, developed by @sorger_peter et al.
Multi-modal digital pathology for colorectal cancer diagnosis by high-plex immunofluorescence imaging and traditional histology of the same tissue section
biorxiv.org/content/10.1101/…
