Artem Lomakin (@LomakinAI) header
Artem Lomakin (@LomakinAI) profile picture

Artem Lomakin

@LomakinAI

Postdoctoral scientist @StanfordCancer | PhD @emblebi and @DKFZ | studying how cancer cells are evolving in spatial context

 San Francisco, USA
tulerpetontidae.github.io/
Joined July 2018
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Photo by Artem Lomakin (@LomakinAI)Photo by Artem Lomakin (@LomakinAI)Photo by Artem Lomakin (@LomakinAI)Photo by Artem Lomakin (@LomakinAI)Photo by Artem Lomakin (@LomakinAI)Photo by Artem Lomakin (@LomakinAI)Photo by Artem Lomakin (@LomakinAI)Photo by Artem Lomakin (@LomakinAI)Photo by Artem Lomakin (@LomakinAI)Photo by Artem Lomakin (@LomakinAI)
How much does your medical history reveal about your future? As a team effort of @MoritzGerstung and @ewanbirney's labs, we present Delphi-2M, a transformer for modelling future health based on past medical history. nature.com/articles/s41586-0…
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Artem Lomakin retweeted
Paula W (@PaulaH_W) profile picture
Paula W@PaulaH_W4 Jul 2024
Introducing *fullRankMatrix*, available on CRAN! @const_ae and I developed this R package to construct full rank design matrices. Esp. relevant for binary matrices that contain linearly dependent columns. Use fullRankMatrix for accurate linear model interpretation! 📊 #rstats
Image from Paula W (@PaulaH_W)
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Exciting news! I'm looking for talented individuals to join my soon-to-be-launched Emmy Noether group supported by @dfg_public and @UniOsnabrueck! Reach out if you're passionate about #cryoEM and #photosynthesis! bit.ly/ChlorophyllPhD bit.ly/ChlorophyllPostdoc #ScienceJobs
Image from Dmitry Shvarev (@DmitryShvarev)
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The alternating growth pattern of clones within a ductal carcinoma in situ below was one of the most intriguing observations and I keep coming back to it. The coin provides a sense of the scale. The clones have co-existed for ~10 years. Why didn’t one replace the other?
Artem Lomakin (@LomakinAI) profile pictureArtem Lomakin@LomakinAI9 Nov 2022
Replying to @LomakinAI
If everything is done right, we get a clonal map just like the one below. The tumour (an early stage breast cancer) tissue is coloured based on the dominant clone. A striking heterogeneity spans centimetres of tissue! (British penny for scale)
Image from Artem Lomakin (@LomakinAI)
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Check out the review on digital pathology in oncology by my student @artem_shmatko, Narmin Ghaffari Laleh and @jnkath in @NatureCancer nature.com/articles/s43018-0…
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Leah Rosen (@leahurosen) profile picture
Leah Rosen@leahurosen1 Jul 2022
As great an environment as @emblebi has been for my #PhD I’ve been very disappointed in @embl upper management for not inflation adjusting fellows’ salaries. No increase for EBI fellows in Jan 2022 and (likely) 0.6% in 2023, but “there’s nothing we can do”
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Join our group as a #postdoc to work on the largest double KO screen in human cells to date and identify #drug synergies for 2 hard to treat cancers! Exciting, collaborative project with the @Garnettlab @targetvalidate and industry partners. #networks #machine_learning
Open Targets (@OpenTargets) profile pictureOpen Targets@OpenTargets19 Apr 2021
NEW: @e_petsalaki's group is recruiting a postdoc fellow! The group combines computational and experimental methods to identify combination targets for KRAS-mutant colorectal cancer and triple negative breast cancer. Apply by 16 May: embl.org/jobs/position/EBI01… @EMBLEBIjobs
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79,818 people is 0.11% of the entire UK population testing positive on a single day. A month earlier there were only 10,683 positive cases. Other countries must act to stop B.1.1.7 or risk a similar fate.
Theo Sanderson (@theosanderson) profile pictureTheo Sanderson
@theosanderson3 Jan 2021
Replying to @theosanderson
79,818 people in the UK with COVID were swabbed on the 29th of December (and that'll still go up a bit)
Image from Theo Sanderson (@theosanderson)
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Did the new SARS-CoV-2 B.1.1.7 lineage spread during the English national lockdown? Rising numbers and estimated higher R value suggest so. Together with our colleagues from COG-UK we took a closer look. >> virological.org/t/lineage-sp…
Image from Moritz Gerstung (@MoritzGerstung)
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Artem Lomakin retweeted
Shila Ghazanfar (@shazanfar) profile picture
Shila Ghazanfar@shazanfar21 Nov 2020
I am extremely excited to share our latest preprint, “Highly multiplexed spatially resolved gene expression profiling of mouse organogenesis”! 🥳 Thread below 👇👇biorxiv.org/cgi/content/shor… 1/n
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