Asst. Prof. @ CU-Anschutz | gene regulation and protein folding | single-particle tracking | live-cell imaging | she/her

Colorado, USA
Joined November 2018
Visualizing RNA in live cells using CRISPR @DoudnaLab @NatureBiotech nature.com/articles/s41587-0…
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IgGM: A Generative Model for Functional Antibody and Nanobody Design 1/ IgGM is a novel generative model designed to facilitate the de novo design of antibodies and nanobodies with functional specificity, focusing on their ability to bind specific antigens. This model uniquely generates both the sequences and structures of antibodies in a single step. 2/ The model consists of three main components: a pre-trained language model that extracts sequence features, a feature learning module to identify relevant features, and a prediction module to generate antibody sequences and predict the antibody-antigen complex structure. 3/ IgGM addresses a major challenge in antibody design by generating novel antibody sequences and their structures without the need for existing experimental antibody-antigen complex structures, making it suitable for scenarios involving new antigens. 4/ The model is capable of designing antibody CDR regions, which are crucial for antigen binding, and can also predict and design entire antibody structures, a significant advancement over existing methods that often require pre-existing structures or templates. 5/ IgGM excels in both antibody and nanobody design tasks, achieving superior performance in multiple design scenarios, such as generating antibodies with high specificity and binding affinity to antigens, outperforming previous methods in terms of sequence and structure fidelity. 6/ Its ability to design antibodies and nanobodies for specific epitopes, including the design of multiple CDR regions simultaneously, provides a versatile solution for therapeutic and diagnostic applications. 7/ Experimental results demonstrate IgGM's impressive accuracy, including higher success rates in docking performance and lower RMSD values compared to existing methods, showcasing its potential in the rapidly growing field of AI-driven drug design. 💻Code: github.com/TencentAI4S/IgGM 📜Paper: biorxiv.org/content/10.1101/… #AntibodyDesign #NanobodyDesign #GenerativeModels #MachineLearning #AIinHealthcare #DrugDiscovery #Bioinformatics #ComputationalBiology #DeepLearning #AIforMedicine #ProteinDesign
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Ning Zhao retweeted
Emergency town hall at #BPS2025 Impact of U.S. policies on biophysics research and what you can do about it. Tuesday, February 18 1:30 pm - 3:30 pm Room 411
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Making intrabodies from antibodies just got easier! Learn how we made 𝟭𝟵 intrabodies to bind and light up peptides and histone modifications in live cells. And thanks to Academia, all sequences are freely available. (video credit: Yuko Sato @YukoSatoT2) biorxiv.org/content/10.1101/…
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Ning Zhao retweeted
Excited to share the work on single-molecule translation imaging of C9ORF72 repetitive RNA, spearheaded by @GosiaJl , Shaopeng Wang, and Daoyuan Dong, in collaboration with @shuying_sun, , @NingInScience , @tim_stasevich , now published on Nat Comm: nature.com/articles/s41467-0…
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So excited for tomorrow's Rocky Mountain #RNA Symposium! Welcome to all our out of town guests @SiggyN5 @DMortonPhD @BazziniLab @sshaolab!
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Are you a US-based PhD student from an underrepresented group considering an academic postdoc? The @CUAnschutz Biochem + Mol Gen Dept is sponsoring is inviting applications for our 2023 Summer Seminar Series! Apply here shorturl.at/nDEX3 by Aprul 17th. Please retweet!
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Thinking about presenting a short talk at the upcoming Rocky Mountain RNA Symposium? Register by MARCH 3, 2023 for talk consideration (include title and abstract). bit.ly/3Sr3487 RT @ColoradoRNAClub @RNA_biologist @walters_kb @SiggyN5 @DMortonPhD @sshaolab @BazziniLab
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Gail Robertson passed the BPS Presidential gavel to new President Taekjip Ha this morning! #bps2023
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The Colorado RNA Club, in partnership with RB,I are pleased to announce the renewal of the Rocky Mountain RNA Symposium! FREE registration begins January 15, 2023. Be there or be square! Pass it on @ColoradoRNAClub @RNA_biologist @walters_kb @BeAScientist @Meg_Filbin
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Ning Zhao retweeted
Are you interested in #RNA, #Translation, #SpatialRegulation & #Imaging? Join us at the #CellBio2022 subgroup session “Subcellular Localization of RNA and Translation” at 8:15AM on December 7. We have a line of fantastic speakers!
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We are delighted to announce our next RNA Society Member Spotlight! Dr. Steve L. Bonilla is a postdoctoral fellow currently working at University of Colorado, Denver with Prof. Jeffrey Kieft. rnasociety.org/dr--steve-l--…
Hey #undergrads, eager to learn about graduate programs at Colorado institutions? Want to talk with grad students in #RNA research labs? Please join the @ColoradoRNAClub for our 2022 Undergrad Day! @RNAatPUI @jrRNAscientists @rnabioco @CUAnschutz @CSURams @UCCS @msudenver
Really enjoying the great science, people and food @cshl #cshlsingmol #dyeforspt @NingInScience @binwu1 @LABlake93
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Ning Zhao retweeted
Look forward to giving a talk tomorrow at the Cold Spring Harbor Meeting of Single Biomolecules. I will share a story about how cells spatially coordinate cytosolic and mitochondrial translation. @cshlmeetings #cshlsingmol
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Wish we could press ⏸ on summer ☀️
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Grab a coffee and watch the latest video from the RNA Bioscience Initiative @CUAnschutz @CUMedicalSchool. In the video RBI co-founder and co-director, Dr. David Bentley, deftly explains #RNA in simple, accessible terms. youtu.be/Rjr6GcaN7pQ
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Ning Zhao retweeted
We're excited to officially launch our new ready-to-use recombinant antibody service! 🎉🎉🎉 You can learn more about our antibodies here: hubs.la/Q016VD-l0 or browse the inaugural antibody collection here: hubs.la/Q016VHcv0
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Wonderful new work from our friends in Tokyo (Naonobu Fujita lab and @Cell_Tokyo_Tech) imaging HA-tagged proteins with anti-HA frankenbodies. @NingInScience
A Drosophila toolkit for HA-tagged proteins unveils a block in autophagy flux in the last instar larval fat body A Research Article from Tadayoshi Murakawa, Naonobu Fujita @tokyotech_en and colleagues journals.biologists.com/dev/…