OpenMS Team retweeted
Our study on FDR estimation bias in top down proteomics (TDP) proteoform ID is published in Proteomics! Errors in precursor mass determination is frequent in TDP and the false proteoform IDs from them are not well controlled via target decoy!
analyticalsciencejournals.on…. .
OpenMS Team retweeted
And as the name implies, it is very fast!! If you want to check the accurate proteoform abundance in no time, e.g., for your large scale studies, FLASHQuant should be your choice!
OpenMS Team retweeted
FLASHQuant reports the area of the LC-MS features corresponding to each monoisotopic mass, i.e., each proteoform mass. It also disentangles the shared features between different proteoforms, using shape fitting and signal decomposition.
OpenMS Team retweeted
Preprint alert!! Our new MS1-level label-free quantification tool for top-down proteomics FLASHQuant is presented in BioRxiv!! As a part of OpenMS @OpenMSTeam, FLASHQuant is freely available and open source! Check out: biorxiv.org/content/10.1101/…
OpenMS Team retweeted
Recent version 1.1.0 of quantms is now out. You can now perform DIA using DIA-NN, DDA-TMT, DDA-LFQ, and Phospho localization analysis. Everything is based on standard file formats including mzML, SDRF, mzTab. Great collaboration with @DemichevLab @OpenMSTeam @nf_core teams.
Pipeline release! nf-core/quantms v1.1.0 (Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.)
See the changelog: github.com/nf-core/quantms/r…
OpenMS Team retweeted
Massive collaboration with @OpenMSTeam and @DemichevLab to allow Quantitative MS-based data analysis distributed and in the cloud. quantms allows analyzing DDA-LFQ, DIA-LFQ, DDA-ISO (TMT) proteomics data.
Pipeline release! nf-core/quantms v1.0 (Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.)
See the changelog: github.com/nf-core/quantms/r…
OpenMS Team retweeted
We are excited to announce our summer 2022 fellowship!! Great opportunity for grad students with #MassSpec background to receive training in #CompMS. The application deadline is May 6.
#AcademicTwitter #opensource #proteomics #Metabolomics #Lipidomics #TeamMassSpec
OpenMS Team retweeted
Join us at #ISMB2022 #CompMS to learn about the latest advances in computational mass spectrometry. iscb.org/ismb2022
Keynote speakers: @Ge_Lab_UW, @briansearle, @Smith_Chem_Wisc, @gjpattij.
Abstract submission deadline: April 21, 2022 !
iscb.org/ismb2022-submission…
OpenMS Team retweeted
It really is free and less than 2 weeks away. Register now for the EuPA and EPIC-XS workshop and webinar on Computational Proteomics compomics.com/events/2022-ep…
OpenMS Team retweeted
As part of the @iscb ISCBacademy series hosted by #CompMS, @Yue_Qin_SysBio and @leah_v_schaffer will present their work on integrating protein images and interactions.
Join us on Tue March 29 at 11:00AM ET to hear about this exciting research! iscb.org/iscbacademy
OpenMS Team retweeted
Next @denbiOffice #Bioinformatics #training course: @OpenMSTeam Developer meeting #proteomics #metabolics. For more information see: denbi.de/training/1376-openm…
OpenMS Team retweeted
I made this figure out of my fascination with protein architectures. I call it "Molecular Machinery of Life." Thought to share it with you to enjoy your eyes. Can you detect, by heart, the Nobel Prize-Winning structures? @AcademicChatter #AcademicTwitter
OpenMS Team retweeted
It's Tuesday! Come join us for a bytesize talk on the nf-core/pgdb pipeline with @ypriverol!
Time: 1 pm CET
Place: nf-co.re/events/2021/bytesiz…
OpenMS Team retweeted
The latest insights on Top-Down Proteomics will be discussed by our expert speakers at our free webinar, Wed. 15 Dec. Don't miss your chance to connect with them. Places are limited.
research.pasteur.fr/en/event…
OpenMS Team retweeted
1/n
Super excited!! Our work on the real-time intelligent control of acquisition for top-down proteomics is finally out:
FLASHIda: Intelligent data acquisition for top-down proteomics that doubles proteoform level identification count biorxiv.org/content/10.1101/…
OpenMS Team retweeted
Shameless self promotion - dear #asms2021 please visit my poster TP322 and Jihyung’ TP329 on Real time intelligent data acquisition method and feature based LFQ algorithm for top down proteomics!
OpenMS Team retweeted
Finally, thanks to all the contributions from @EuBIC_ms @OpenMSTeam @pride_ebi @ProteomeXchange #CPTAC members, and all the authors. Especial thanks to my collaborator and friend professor Mingze Bai team enables the annotations of most of the datasets.
OpenMS Team retweeted
@OKohlbacher presents @OpenMSTeam - the flexible #bioinformatics #opensource #software platform for #massspectrometry #data #analysis. For more information see: denbi.de/services/369-openms…
OpenMS Team retweeted
Happy to have played a small role in supporting this.
$5M for 14 projects to advance diversity & inclusion in scientific #opensource.
(Full list of funded projects: chanzuckerberg.com/eoss/prop…) Congrats to all!
#openscience #opensource @cziscience #eoss
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OpenMS Team retweeted
Introducing the bi-monthly FeMS newsletter! Check out the PDF version at femalesinms.com/newsletter/
ALT FeMS bi-monthly newsletter inaugural September issue. PDF version has active links and alt text. Register for mentor pod kick off meeting on Sept 9th. Register for mentor pod, round 2! Virtual Happy Hour on September 16th 8 pm EDT, 17th 10 am AEST with Professor Margaret Sheil AO.
ALT Graduate students and post doc can sign up to give transition talks. Take a look at previous FeMS Spotlight, and sign up for the FeMS Spotlight. Join the FeMS directory of underrepresented scientists. Females in Mass Spectrometry (FeMS) is a community-led initiative to create a network of support for women in the field of mass spectrometry. FeMS supports related events anywhere women in mass spectrometry happen to be gathered, be it a virtual gathering, regional conference, international event, campus, or anything in between. Check out the FeMS website for upcoming events, and recordings of past events. FeMS sponsors are Agilent, Avanti, Indigo Bioinformation, Sciex, ThermoFisher Scientific and MSACL.