We create proteins that solve challenges in medicine, technology & sustainability 🟡 2024 Nobel in Chemistry 📍@UWMedicine — https://xitter.cf/t.co/1PR2DtKL49

Seattle, WA
Joined September 2013
This is what a communal brain—a central tenet of the IPD approach—looks like in action. 🧠 We're thrilled to present RFD4-Proteina, co-developed with @NVIDIAHealth! Can't wait to see what you build: rfd4-proteina.org/
🧬 Design proteins faster and send fewer, better candidates to the lab. Introducing RFD4-Proteina, a new NVIDIA BioNeMo open model co-developed with @UWproteindesign. ▫️Fast: 13× faster generation than RFdiffusion3 at 200 residues ▫️ Smart: state-of-the-art across 12+ protein design tasks ▫️ Programmable: set your design inputs and use test-time compute on harder problems Start with our binder-design tutorial nvda.ws/3VK9Uvr
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RFD4-Proteina, co-developed by @UWproteindesign @UWMedicine & @NVIDIAHealth, debuts today at GTC Berlin. The open-source generative model will use biomolecular reasoning to find new protein solutions for medicine, sustainability, materials & biotech. tinyurl.com/3pw3jn92
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Avengers assemble: 1 year BakerLab + NVIDIA GenAIR = 🔥 rfd4-proteina.org Presenting RFD4-Proteina, our latest protein design model, significantly better and faster than everything we compared against, both in silico and in the lab! 1/30
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Today we're sharing an update on our diffusion method from last year, RFdiffusion3, in @ScienceMagazine. Notably, we show significant improvement in design of sequence specific proteases for amyloid sequences and metallohydrolases for pesticide degradation.
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In Science, researchers present RFdiffusion3, a new generative AI system that designs proteins and nucleic acids atom by atom, which could enable the ability to engineer novel biomolecules with precise, complex functions. Learn more: scim.ag/4hOQVIF
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Exciting new @Nature pubs coming out of the IPD this week! Researchers Anqi Chen, Kejia Wu, and Hojae Choi successfully designed de novo proteases. These ‘molecular scissors’ cleave user-specified target sequences with high precision.
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We can scale up our text-to-protein work thanks to generous support from Google.org! blog.google/company-news/out… With @UWproteindesign, we're working on sustainability. Hopefully one day we'll be able to simply tell the model, "design an enzyme to degrade plastic"🪄
Super excited to share our year-long work on designing proteins directly from natural language, led by @jleechung in collaboration with @UWproteindesign @allen_ai! Current protein design models are constrained in what they can condition on. As an analogy, think of an image generation model that only conditions on discrete class labels like "dog" or "cat", or "outdoors" or "indoors"; in contrast, a modern text-to-image model can be much more expressively controlled. We do the same for protein design here, and the resulting model natively turns natural instructions into corresponding protein structures. This makes it much more effective at designing proteins with particular form/function, and it works especially well for agent-driven protein design!
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We're thrilled to share that we've been selected as a recipient Google.org's Impact Challenge: AI for Science! We’ll be partnering with Dr. Pang Wei Koh to design proteins with natural language to advance sustainability applications, such as plastic degradation.
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Super excited to share our year-long work on designing proteins directly from natural language, led by @jleechung in collaboration with @UWproteindesign @allen_ai! Current protein design models are constrained in what they can condition on. As an analogy, think of an image generation model that only conditions on discrete class labels like "dog" or "cat", or "outdoors" or "indoors"; in contrast, a modern text-to-image model can be much more expressively controlled. We do the same for protein design here, and the resulting model natively turns natural instructions into corresponding protein structures. This makes it much more effective at designing proteins with particular form/function, and it works especially well for agent-driven protein design!
✨Introducing Prompteina: all-atom protein design directly from natural language✨ - Control diverse protein properties through a single text prompt - Higher predicted binding confidence than baselines - First experimentally validated de novo binders reported for GM2A 🧵
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✨Introducing Prompteina: all-atom protein design directly from natural language✨ - Control diverse protein properties through a single text prompt - Higher predicted binding confidence than baselines - First experimentally validated de novo binders reported for GM2A 🧵
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These glycoproteins engage immune lectins and pathogenic bacterial adhesins through their #glycans, showing that we can now design functional glycoproteins.
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🚨 pre-print alert 🚨 Glycosylation has remained outside the reach of biomolecular design, but with new all-atom methods we are now able to control the types of glycans displayed on our de novo proteins. In our newest @biorxivpreprint, we present multiple structurally-encoded oligomannose-type glycoproteins, establishing glycans as a designable parameter! bit.ly/4s2qK4M
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Our team aims to build better magnets by growing them with protein scaffolds. Their method, Protein Organised Engineered Materials (POEM), allows for the programming of each core property of the magnetic crystals as they grow.
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A new Huang Foundation grant, totaling nearly 7 million hours of compute time, will accelerate @UWproteindesign development of open-source AI models for protein design. Read the full story from @uwmnewsroom to learn more. bit.ly/4yFgMZy
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The Institute for Protein Design is hiring postdocs! 🧬 We design new proteins to tackle big challenges in medicine, sustainability & technology. Interested in joining our interdisciplinary environment? Learn more here: ipd.uw.edu/join-us/
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