Data Science Engineer @SDSCdatascience | Genomics, Reproducibility, Open data | Previously @institutpasteur and @UNIL
Lausanne, Switzerland
Joined May 2011
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Cyril Matthey-Doret @[email protected] retweeted
Announcing myloasm, a new long-read (ONT R10/PacBio) metagenome assembler. With @lh3lh3.
myloasm-docs.github.io/
Cyril Matthey-Doret @[email protected] retweeted
Hello to all #bioinformatics #rustlang,
I often copy code to generate data when writing tests. After 3 or 4 times, I got fed up and created biotest crates.
biotest can generate fasta, fastq and vcf, I'm open to any suggestion, feedback or contribution.
github.com/natir/biotest
Cyril Matthey-Doret @[email protected] retweeted
RECRUITING two PhD candidates: on butterfly colour & behaviour, and on flower colour & scent; Please RT
Cyril Matthey-Doret @[email protected] retweeted
RIP Bram Moolenaar
en.wikipedia.org/wiki/Bram_M…
Cyril Matthey-Doret @[email protected] retweeted
Here's our pre-print describing our GPT-3 based knowledge extraction tool SPIRES: arxiv.org/abs/2304.02711. Great work from @harry_caufield et al! SPIRES allows you to specify a knowledge schema (in @linkml_data) and then populate instances of that schema from unstructured text
ALT depiction of SPIRES approach: input is a schema and text, the OntoGPT engine will run SPIRES by recursively querying GPT-3 for prompt completions, the end result is grounded using public databases and ontologies
Cyril Matthey-Doret @[email protected] retweeted
Compiled by @VatanHuzeir, the latest cache of internal documents describing Big Oil's concealed knowledge of global warming is a gold mine.
One bombshell is a confidential @Shell scenario report from 1989 which imagined two futures: SUSTAINABLE WORLD and GLOBAL MERCANTILISM 🧵
