Twitter account of the Daub lab at Karolinska Institutet
Huddinge, Sverige
Joined November 2015
- Tweets124
- Following100
- Followers207
- Likes37
Daub Lab retweeted
The comprehensive atlas of developmental regulatory elements in zebrafish is published today in @NatureGenet nature.com/articles/s41588-0…. In addition to the BioRxiv submission xitter.cf/daniocode/status/14253… in this paper we added further resources and results. (1/n)
ALT black and white line genome browser track lines forming different developmental stages of zebrafish in the style of the album cover unknown pleasure by joy division.
ALT List of research highlights: Highlights • 1,802 samples, 38 stages, 38 labs, 19 assay types • precise TSS, alternative promoters, promoter architecture classes • developmental TF activity-qualified TFBS prediction • >140,000 cis-regulatory elements, single-cell based cell-type specificity • new visualisation of epigenetic profiles, new functional subclasses • H3K27ac-rich ensembles support early expression of developmental factors and long-range regulation • vertebrate epigenomic landscape conservation by anchored projection tool • vertebrate regulatory element equivalence without sequence conservation
DANIO-CODE is proud to share our findings and a huge multi-genomics resource on the regulatory elements in the development of #zebrafish. We analyzed 1,802 previously (un)published sequencing data sets across 38 developing stages and 21 assay types. (1/n) biorxiv.org/content/10.1101/…
ALT Screenshot of the title and authors of the paper.
ALT bubble chart of all available datasets per zebrafish stage
Daub Lab retweeted
Your #postdoc mission with @DogGenome, should you accept it, is to find how regulatory elements determine behavioural differences between different dog breads and wolfs, and how these are related to human psychiatric conditions.
nature.com/naturecareers/job…
Daub Lab retweeted
Today @KAWstiftelsen announced a 12-year SEK 3.1 billion funding initiative to support data-driven #lifescience in Sweden with #SciLifeLab the main host.
The donation represents enormous support to the Swedish life science community, says Olli Kallioniemi
bit.ly/3kdazxK
Daub Lab retweeted
We are happy to announce The 7th RIKEN-KI-SciLifeLab Symposium: Biomedical Data for Artificial Intelligence will be held online on November 2, 2020, 9-11 Stockholm time (17-19 JST). #AI @riken_en @karolinskainst @scilifelab scilifelab.se/event/the-7th-…
Daub Lab retweeted
Pipeline release! nf-core/cageseq v1.0.0 (CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.)
See the changelog: github.com/nf-core/cageseq/r…
Daub Lab retweeted
New Public Hub dataset for zebrafish researchers, DANIO-CODE. Thanks to @daniocode, @LabMueller, @ferencmueller, @daublab, @GroupLenhard, @ZencodeITN, @ZebrafishRock, and others at DANIO-CODE (danio-code.zfin.org) for creating this data resource:
genome.ucsc.edu/s/dschmelt/D…
Daub Lab retweeted
Debatten om den svenska strategin för arbetet mot smittspridningen fortsätter. Två budskap från mig:
1 Debatten måste bygga på kunskap, tillgängliga fakta och föras med en anständig ton
2 Hot, osakligheter, "alternativa fakta" och grumliga källor hör inte hemma i en seriös debatt
Daub Lab retweeted
Great team effort by Kai @kaukrise, Clemens @clemens_hug and the rest of @vaquerizas_lab members! Also, thanks a lot to all the beta testers for your help in reporting bugs, etc.
FAN-C is available through pip installation or here: github.com/vaquerizaslab/fan…
Daub Lab retweeted
Apply to MedBioInfo, the Swedish National Graduate School in Medical Bioinformatics! medbioinfo.se
Daub Lab retweeted
An updated model on transcriptional regulatory elements and a review of recent insights into the determinants of enhancer and promoter activities. Joint work with @albin_san nature.com/articles/s4157…
Daub Lab retweeted
Dr Carsten Daub @carstendaub @daublab from @karolinskainst continues the discussions at #ICGEBMeeting in Cape Town
Daub Lab retweeted
See the latest updates in epigenetic techniques at @ngisweden with slides from @tallphil's talk at #EpiChrom2019
Slides now available: slideshare.net/tallphil/epic…
Let us know if you'd like to work with us on any of these techniques! Either DM @ngisweden or send an email to [email protected]
Daub Lab retweeted
The DOGA Data Coordination Center #DCC will make a comprehensive cross-tissue genomic data atlas FAIR (Findable, Accessible, Interoperable, and Reusable) for the research community.
Daub Lab retweeted
Data providers joining the DoGA Sample Annotation Quality Control Meeting @helsinkiuni for systematic review of samples that will be publicly available. #QC #CAGE #doggenomeannotation
Daub Lab retweeted
Warm welcome to our newest ZENCODE-ITN member Irene Stevens, joining the @daublab to help with the genome annotation pipelines zencode-itn.eu/researchers/2… /MH – at Stockholm, Sweden
Daub Lab retweeted
Massive thanks to Matthias @daublab, Kadir @ak_mukarram, Michael [email protected] Carsten @daublab, Damir @CroBeaver and Boris @BorisLenhard and @ZencodeITN and many more!
Daub Lab retweeted
First release of the DANIO-CODE track hub with a thousand epigenomics tracks is open! #IZCF2018, #ZencodeITN, #zebrafish
Check it out danio-code.zfin.org! Find your favourite gene, its expression, its true promoter or predict its enhancers and noncoding RNAs around it!
Daub Lab retweeted
Another entry for #gettingtoknowzencode. This time @carstendaub tells us about him and ZENCODE in a video interview youtube.com/watch?v=h-ZgXo61…
Daub Lab retweeted
Exciting talk about specification of neuron type @daublab group meeting by Adrian Moore from RIKEN Brain Institute, Japan. Fika as usual!!
