Research Computing Engineer at @WEHI_research. #Rstats, #Python, #Rustlang, #javascript, #Bioinformatics. More active on Mastodon: https://xitter.gq/t.co/UNeZnznJmY
Melbourne, Australia
Joined March 2014
- Tweets515
- Following283
- Followers322
- Likes5.6K
Michael Milton retweeted
We're advertising for a Bioinformatics Research Assistant to work with me at @WEHI_research to process and analyse data from a range of single-cell and spatial 'omics technologies.
Full details of the role & how to apply: wehi.wd3.myworkdayjobs.com/W…
Michael Milton retweeted
🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵.
The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be
explored and retrieved as #SingleCellExperiment. Please RT!
-> stemangiola.github.io/Curate…
ALT Cartoon of the structure, content and use of the CuratedAtlasQueryR API. It uses #CELLxGENE data, #DuckDB infrastructure, #tidyverse API
Michael Milton retweeted
Pipeline release! nf-core/proteinfold v1.0.0 (Protein 3D structure prediction pipeline)
See the changelog: github.com/nf-core/proteinfo…
Michael Milton retweeted
New Research Officer role available in the Bahlo lab for 2023. Connecting up imaging analysis with genetics. Looking for an image analysis specialist with interest in learning about genetics in a highly collaborative lab.
wehi.wd3.myworkdayjobs.com/e…
Michael Milton retweeted
"A year's worth of weekends" @realAaronLun's efforts to re-write key scRNA-seq @Bioconductor/#rstats packages into C++ for use with WASM for the magic that powers jkanche.com/kana/ #biocasia2022
Michael Milton retweeted
The Monash Bioinformatics Platform is hiring, 2 exciting roles available: Senior Technical Officer:careers.pageuppeople.com/513… and Senior Research Fellow:careers.pageuppeople.com/513… @MonashCCS @ACBDresearch @Monash_MTRP #bioinformatics
Michael Milton retweeted
Accessing UniProt's new REST API with Python is a breeze with Michael Milton's (@multimeric) awesome package Unipressed (multimeric.github.io/Unipres…). Examples illustrating many features & abilities in order to add an update to a thread at Biostars: biostars.org/p/286919/#95370…
ALT Python code demonstrating Unipressed to access Uniprot's new REST API. Code as text: https://gist.githubusercontent.com/fomightez/9d6a04385d143bf7c1de34cefffc0101/raw/a9fd1b6d259f856a1f4a3a7d261e9370d09fae7a/unipressed_example.py
Michael Milton retweeted
The sequel to Rust is a pure type system with no actual code allowed. There are now 4000 string types, and the compiler erases your system files in retribution whenever you make a type error, but that's okay because it has zero runtime cost.
Michael Milton retweeted
Last week of @th3nn3ss 's @outreachy internship! Big thanks to @biocrusoe and @melissablck! It was great to co-mentor your work on wdl-cwl-translator Dennis! 🥳👏🎉🙇♂️
GitHub repository: github.com/common-workflow-l… #opensource #outreachy #inclusion #programming #commonwl #wdl
Michael Milton retweeted
WE'RE HIRING! Looking for 2 Clinical Bioinformaticians to join our friendly #team to support the @PeterMacCC #cancer #genomics service. 🧑💻🧬
Excellent Python #programming skills and experience with #cloud #computing would be an advantage.
seek.com.au/job/55824127
Michael Milton retweeted
Do you want to work on @AWSAmplify? It's *such* a fun product - we're building tools that allow frontend and mobile developers to build fullstack apps. We even launched Figma to React component functionality this year!
Here's a thread with some open roles 🧵
Michael Milton retweeted
Using @multimeric's tidyMultiQC R package and exporting the tidy dataframe to .parquet was a breeze: r-bloggers.com/2021/09/under… ... But then I thought that perhaps @tallphil is interested in having a multiqc_data_tidy.json export for MultiQC (to not break the current json output)?
Michael Milton retweeted
you might think the 3 in boto3 signifies "it's the aws sdk for python 3" but it's actually a whimsical in-joke about how there are 3 ways to do anything with boto (but usually only one works)
Michael Milton retweeted
🐍 Python 3.10 is finally released 🎉 Thanks to everyone who followed along with the release at the release party 😁. We are super excited to know what cool and exciting things you develop with this new version of the language 🧪. You can get it here:
python.org/downloads/release…
Michael Milton retweeted
nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning biorxiv.org/content/10.1101/… github.com/nf-core/mag
Michael Milton retweeted
Welcome to @BiosigL new Masters students!
Yixuan is developing new methods to predict druggable targets.
Michael H is expanding our work into COVID-19.
Ke is looking at drug metabolism.
Genevieve is looking at what makes a drug.
Michael M brings clinical genomics analysis.
Michael Milton retweeted
Lead developer (at @MelBioInf) on the Janis “Portable Pipelines Project”, an exciting system that simplifies the specification of complex analysis workflows and their deployment on HPC and Cloud systems jobs.unimelb.edu.au/en/job/9… #UseGalaxy