🇻🇳 PhD student at @GSKGradSchool, @NYUAbuDhabi and U of T @MoGen_Grad alum. Mostly comp bio, striving to be better at cancer and stats. Views are my own.
Joined March 2019
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I'm #PhDone! So incredibly thankful for everyone at the Schultz lab, Clinical Data Mining, @GSKGradSchool @CompOncMSK for your amazing support during the past years. It took a village to get here - I could not have done it without you!
Congratulations to GSK PhD student @phoscience in the lab of Nikolaus Schultz, for defending her thesis entitled "Methods For Clinical Feature Abstraction and Driver Mutation Annotations Improve Utility of Real-World Cancer Data"
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Work on Open Source Software for a summer and support Cancer Research!
Paid internship - any age any background!
Flexible schedule (175h or 350h projects)
Read more: github.com/cbioportal/gsoc
Thinh Tran retweeted
OncoKB, @sloan_kettering MSK's precision oncology knowledge base, is now the first somatic human genetic variant database to achieve partial recognition by the @US_FDA! Read the announcement below, and visit our updated website at oncokb.org.
fda.gov/drugs/resources-info…
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I am very excited to present to you my last paper from @ClaudeDesplan's lab. A fun collaboration with @tonymrossi that started many years ago, when we were trying to find ways to identify all transcription factors in the temporal series of the medulla neuroblasts.
A comprehensive series of temporal transcription factors in the fly visual system biorxiv.org/cgi/content/shor… #bioRxiv
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Molecular profiling of multiple serial tumor biopsies from a #melanoma patient treated with immune checkpoint inhibitors, uncovers changes in the tumor microenvironment occurring during treatment resistance.
nature.com/articles/s41591-0… #MelanomaAwarenessMonth @gmboland @dliu_ccb
When I grow up, I'd wanna be like Claude. He's smart, funny, inspiring, and by making time for me when I was a lowly undergrad, he convinced me that a career in science would be the best career. Thank you, Claude.
dev.biologists.org/content/1…
My Master's thesis is now published! I laughed, cried and almost quitted along the way, but I had the best mentors to keep me going. Thank you @garybader1 and everyone in the Bader lab esp. @PatternsNGames @InnesBrendanT - this could never happen without you.
Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data now published in @PLOSCompBiol, with @phoscience
journals.plos.org/ploscompbi…
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New Yorkers Planning 2-Minute Clap For Essential Workers On Friday gothamist.com/arts-entertain… #ClapBecauseWeCare
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Check out our @AnnualReviews article on deciphering cell fate decision by integrated single-cell analysis: annualreviews.org/doi/abs/10…
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Our @ruth_isserlin @garybader1 paper: showing how cell cycle duration can fine tune cell number, cell diversity and cell proportion in a developing tissue.
Control of tissue development by cell cycle dependent transcriptional filtering biorxiv.org/cgi/content/shor… #bioRxiv
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Many biologists are interested in how well RNA and protein expression correlate. We confirmed that they have middling correlation on average (~0.5). But the scope of these data let us ask this on a per-gene level across many tissue lineages. (3/13)
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Interested in single cell genomics but need help getting started? Check out the agenda for my lab's free workshop next Friday. Very excited that we will be livestreaming all talks with the support of @cziscience! Please RT and spread the word! satijalab.org/scgd
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Apply to @sloan_kettering Gerstner Sloan Kettering Graduate School of Biomedical Sciences (@GSKGradSchool) to do your PhD in clinical research & basic sciences. Deadline: Monday, 12/2.
✅No GRE requirement
✅No application fee
sloankettering.edu/gerstner/…
Learn about what the GSK program has to offer from a recent graduate! sloankettering.edu/gerstner
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We (with Aviv Regev) want to share with you our preprint scPhere(biorxiv.org/content/10.1101/…), a deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces @humancellatlas
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The Scientist Who First Showed Us The Double Helix: A Personal Look At Rosalind Franklin via @forbes forbes.com/sites/johncumbers…
Still in awe that our time-series scRNAseq method Tempora (named after Cicero's "O tempora o mores" and *not* the UK's secret surveillance system) came together. Any feedback would be appreciated!
Tempora: cell trajectory inference using time-series single-cell RNA sequencing data biorxiv.org/cgi/content/shor… #biorxiv_bioinfo