@rootphenomics

We advance root phenotyping that links form to function from basic to applied science focusing on carbon. @LarryMattYork leads @ORNL. Member opinions only

 Oak Ridge, TN
rootbiologist.com
Joined July 2016
  • Tweets119
  • Following1.5K
  • Followers2.1K
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Root Phenomics Team retweeted
Federico Ariel@arg_epilab2 Jun 2021
We are launching an Arabidopsis root segmentation challenge based on our recent ChronoRoot system🌱! Join us at @cvppa2021 workshop during @ICCV_2021! For more info check👇 @RootBiologyNews @RootPapers @rootomics @rootphenomics @Rootstrapping @RootScientists @BleinThomas
Enzo Ferrante@enzoferrante2 Jun 2021
Do you have a segmentation method and want to benchmark it in a cool task? Join us for the first root 🌱 segmentation challenge for plant phenotyping organized at @cvppa2021 workshop during @ICCV_2021 ! Website --> sites.google.com/sinc.unl.ed…
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Root Phenomics Team retweeted
New Phytologist@NewPhyt14 May 2021
Functional phenomics and genetics of the root economics space in winter wheat using high‐throughput phenotyping of respiration and architecture @LarryMattYork @haichao_guo @habtamu_tamir @marcusdgriff @soilnwater @ASeethepalli @rootphenomics nph.onlinelibrary.wiley.com/…
Platform for phenotyping root respiration and other root traits of winter wheat seedlings.

ALT Platform for phenotyping root respiration and other root traits of winter wheat seedlings.

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Root Phenomics Team retweeted
Dan Barber@DanBarber30 Oct 2020
A root system is the literal and figurative foundation of transforming our food system. sciencedaily.com/releases/20…

Crop breeding: Getting to the root of the problem

Roots play a vital role in crop plants. They take up water and nutrients for the plant and keep it help firmly in the ground. But not all roots are the same.

sciencedaily.com
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Root Phenomics Team retweeted
Sonali Roy@SonaliRoy_17 Aug 2020
When in doubt do what @marcusdgriff does. Label samples with 1) Expt name 2)Experiment number 3)Genotype 4)Treatment 5)Replicate Numbers 5) Your name/Lab name @rootphenomics . Bonus- print individual QR codes to easily relate downstream information with the correct replicates.
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Root Phenomics Team retweeted
Larry M. York@LarryMattYork16 Jun 2020
Fresh preprint by @marcusdgriff @rootphenomics representing 4 years of work to develop a phenotyping method RhizoFlux for multiple ion nutrient uptake by roots to make new discoveries. Uptake rates are heritable, correlated among nutrients and respiration biorxiv.org/content/10.1101/…
Figure showing uptake by roots and difference between total uptake and specific uptake on a length basis

ALT Figure showing uptake by roots and difference between total uptake and specific uptake on a length basis

Figures showing how uptake of nutrients are correlated, if you increase uptake of one nutrient, then others increase. Increased uptake is also associated with increased respiration, a possible cost.

ALT Figures showing how uptake of nutrients are correlated, if you increase uptake of one nutrient, then others increase. Increased uptake is also associated with increased respiration, a possible cost.

How seeds are germinated to place roots in tubes that go into common hydroponics bins. Those tubes make it easy to transfer to individual roots to solution chambers to measure uptake by depletion.

ALT How seeds are germinated to place roots in tubes that go into common hydroponics bins. Those tubes make it easy to transfer to individual roots to solution chambers to measure uptake by depletion.

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If you’re woman with a PhD who teaches ecology at a college in Ohio with ties to PA, this message is for you: I met your dad while doing field work. He was going for 21 miles on his bike around the lake. Says he can still outsmart you when it comes to trees but not sedges
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Root Phenomics Team retweeted
James Schnable
@szintri18 Feb 2020
Thrilled to see @Valiancy_miao's preprint out. Flexible and robust functional principal component analysis to map genes controlling differences in plant phenotypes change over time. doi.org/10.1101/2020.02.16.9…
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Root Phenomics Team retweeted
Saoirse Tracy@SaoirseT20 Dec 2019
I’m looking for somebody who would like to start a 3 year post-doc in Dublin, Ireland in collaboration with @KatieField4 and Urwin Group @ Leeds. They must have soil/plant/microbe experience, preferably has X-ray CT/computer science/ imaging skills. Who is out there? DM me please – at Wicklow, Ireland
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Root Phenomics Team retweeted
AtBlueSky@jbrumos711 Oct 2019
The fight against climate change may seem hopeless, but humanity has a simple and powerful ally in plain sight: plants. Great interview to Joanne Chory @salkinstitute Can 'Supercharged' Plants Solve the Climate Crisis? foreignpolicy.com/2019/07/20…
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Root Phenomics Team retweeted
McDaniel Lab@Soil_Plant_IXNs30 Jul 2019
Tomas, Christar, and Haley working on rhizoboxes containing soils from a long-term experiment (25 years) with and without P and tillage! They are looking at the effects of these treatments on soybean root growth and rhizosphere P dynamics. @rootphenomics
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Root Phenomics Team retweeted
Magdalena Julkowska@mmjulkowska7 May 2019
Are you struggling with your data analysis? Do you want a customizable, automated pipeline without cracking your brain about which R-commands to use? Check out our @MVApp007 which is now available at @PlantPhys for an early view! #ShamelessSelfPromotion plantphysiol.org/content/ear…
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Root Phenomics Team retweeted
KhanLab@FruitDiseases24 Oct 2018
Co-authored a manuscript with @sweetpotato360 on 'Sweetpotato Root Length in Response to Phosphorus Deficiency'. Thanks @RTB_CGIAR for funding the work @Cipotato @rootphenomics @oursweetpotato hortsci.ashspublications.org…
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Root Phenomics Team retweeted
James Schnable
@szintri26 Sep 2018
My colleague Josh Herr @number_three introduces Larry York (@rootphenomics) for his seminar here at UNL. They overlapped at PSU.
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Root Phenomics Team retweeted
Larry M. York@LarryMattYork27 Jul 2018
A publications page on a PI's institutional website should include: (Please retweet)
80%all their published work
2%only work at institution
16%only recent work
2%recent at institution
83 votes • Final results
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Root Phenomics Team retweeted
D von Wangenheim@DvonWangenheim24 Jul 2018
Basic principle of root growth. Cells in the elongation zone push the root tip through soil. I know, the root cap is missing. What else can I improve?
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What’s the most unique experience you’ve had thanks to your job in science? #ImAScientistGetMeOutOfHere
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Root Phenomics Team retweeted
Danforth Center@DanforthCenter6 Jan 2018
Hurry! There is still time to enroll in @DrHowardBerg's Integrated Microscopy Facility short course in confocal #microscopy held January 8-12, 2018. Join us! ow.ly/EX8O30heEoo #imaging
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Root Phenomics Team retweeted
Molly Hanlon@mthanlon3 Jan 2018
Ten years of multiple student side-project effort is now published. You, too, can make your plates like soil! Buffered delivery of phosphate to Arabidopsis alters responses to low phosphate | Journal of Experimental Botany | Oxford Academic academic.oup.com/jxb/advance…
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Root Phenomics Team retweeted
Larry M. York@LarryMattYork19 Dec 2017
What are good examples from the past three years that used high-throughput phenotyping of populations to increase understanding of physiological processes in plants, not only genetically? For an invited review I'm working on about functional phenomics.
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Root Phenomics Team retweeted
Phenome 2020@PlantPhenomics14 Dec 2017
Learn more about the North American #plant #Phenotying NAPPN assembly at #Phenome2018 on @plantae_org: community.plantae.org/articl… @IAcornflake @I_P_P_N @maliagehan
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