@AaronNewmanLab

Computational biology, cancer genomics, & stem cell bioinformatics lab @Stanford @czbiohub

 Stanford, CA
anlab.stanford.edu
Joined October 2021
  • Tweets83
  • Following271
  • Followers1.2K
17Media
SCI @AaronNewmanLab & others unveil CytoTRACE 2, a deep learning tool that predicts absolute cell developmental potential from #SingleCell RNA-seq data, outperforming prior methods and refining maps of cell fate and potency across tissues. brnw.ch/21wX6j4 @kang_minji_
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Nature Methods@naturemethods29 Oct 2025
CytoTRACE 2: an interpretable deep-learning method that uses scRNA-seq data to predict absolute developmental potential across datasets. nature.com/articles/s41592-0…

Improved reconstruction of single-cell developmental potential with CytoTRACE 2

Nature Methods - CytoTRACE 2 is an interpretable deep learning framework that leverages single-cell RNA sequencing data to predict absolute developmental potential across datasets.

nature.com
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Meet #EcoTyper & CIBERSORTx: #StanDOM's game-changing duo in #CancerResearch: stan.md/3vIz4xI
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Minji Kang@kang_minji_22 Mar 2024
How to trace developmental potential on an absolute scale from single cell expression data? We are thrilled to announce that CytoTRACE 2 is out on bioRxiv! @AaronNewmanLab github.com/digitalcytometry/… doi.org/10.1101/2024.03.19.5…
CytoTRACE 2 logo

ALT CytoTRACE 2 logo

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AACR
@AACR22 Sep 2023
Macrophages and Myeloid Cells: @MaxKrummel, @AaronNewmanLab, @JennGuerriero, and Joseph T. Greene will address this topic in a plenary session at the AACR Special Conference on Tumor Immunology and Immunotherapy (Oct 1-4, Toronto). Learn more: bit.ly/3Pr1bqV #AACRtii23
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Guezguez lab
@GuezguezL21 Sep 2023
Fantastic session at #CICON23 about current and future developments in #spatial #transcriptomics #singlecell a growing field that open new applications for basic and translational #Immunotherapy 🔬🧬📍🗺 @JoakimLundeberg @AaronNewmanLab
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Excited to share that our paper with @AaronNewmanLab is out in Immunological Reviews!! “CD4 T cells and toxicity from immune checkpoint blockade” Led by ⭐️ trainees: @EarlandNoah @WUSTLmstp, Wubing Zhang @StanfordMed, @abulusmani @WashURadOnc & @aishwarya_nene @YaleMed.
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Replying to @NatureBiotech @CellStanford @Stanford @Oslounivsykehus @StanfordCancer @AaronNewmanLab @ChloeBSteen
Researchers invent a tool to create high-resolution maps of gene activity, opening a path to improved diagnostics and therapies #NBTintheNews via @StanfordMed med.stanford.edu/stemcell/ne…
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Mammary Cell News
@MammaryCell11 Nov 2022
🎇 New in @ScienceAdvances! A team of researchers, including @ssikandar, @AaronNewmanLab, and @gungulati (and more - too many to tag!), identified LMO2+ breast cancer cells that integrated into the vasculature and initiated metastasis. Read more ➡️ bit.ly/3UNvjxW
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Replying to @AaronNewmanLab
@AaronNewmanLab discussing identification of tumor “eco types” using big data. Again, love the cross pollination from ecology to cancer biology #SITC22 – at Boston, MA
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#SITC22 Science Highlight: Join @SmithImmunology & Janis Taube, MD, MSc @HopkinsMedicine, @IamLinghua @MDAndersonNews, Nir Hacohen, PhD @MassGeneralNews and Aaron Newman, PhD @StanfordMed to discuss big data & clinical discoveries. Schedule: ow.ly/9Iu350JWbkh
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Chloé Steen, PhD@ChloeBSteen22 May 2022
How to efficiently study spatial transcriptomics data at single cell resolution? We are proud to introduce CytoSPACE, a new tool for fast and robust mapping of single cells to spatial transcriptomes, now on bioRxiv biorxiv.org/content/10.1101/…
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H. Courtney Hodges@hodgeshc10 Apr 2022
Replying to @hodgeshc @AaronNewmanLab
Wow, thank you to @AACR for this incredible coverage of our session! If you are registered, you can still watch our session online using the link in this article. aacrmeetingnews.org/news/new…

New visualization techniques allow for dissection and characterization of tumors with unprecedented...

Three experts, including H. Courtney Hodges, PhD, provided an update on emerging concepts and technologies to visualize tumor biology during a Saturday morning Educational Session.

aacrmeetingnews.org
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Congratulations to @ChloeBSteen, @AACR-@AstraZenecaUS Lymphoma Research Fellow on your back to back publications! Way to go! @AACRFoundation
Chloé Steen, PhD@ChloeBSteen30 Sep 2021
[1/14] How does one study the tumor microenvironment at the click of a button? Excited to introduce #EcoTyper, our newest tool for digital cytometry, published today in @CellCellPress and @Cancer_Cell Links to the papers: cell.com/cell/fulltext/S0092… cell.com/cancer-cell/fulltex…

Atlas of clinically distinct cell states and ecosystems across human solid tumors

EcoTyper, a machine learning framework for identifying and characterizing cell states and ecosystems from gene expression data, yields insights into the cellular landscape and community structure of...

cell.com
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Aaron Newman Lab retweeted
Cell@CellCellPress1 Oct 2021
Now online! Atlas of clinically distinct cell states and ecosystems across human solid tumors dlvr.it/S8k5vD

Atlas of clinically distinct cell states and ecosystems across human solid tumors

EcoTyper, a machine learning framework for identifying and characterizing cell states and ecosystems from gene expression data, yields insights into the cellular landscape and community structure of...

cell.com
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