BME PhD Student in De Vlaminck Lab at Cornell University
Ithaca, NY
Joined November 2018
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Benjamin Grodner retweeted
📢 Short talks:
Dr Ben Grodner @Cornell
✅HiPR-FISH (PMID: 33268897) maps genera spatial heterogeneity (#biofilms)
✅MGE-FISH mapping mobile genes
✅overlap tools to determine interactions and spatial ecology
doi.org/10.1101/2023.06.09.5…
#HavingIMPACTT2023 @IMPACTT_Canada
Benjamin Grodner retweeted
Elegant technique from @BenjaminGrodner using molecular barcoding to visualize mobile DNA transfer - many applications to microbiome studies, bacterial genetics, and basic biofilm microbiology. Also - beautiful images. #HavingIMPACTT2023 @IMPACTT_Canada
biorxiv.org/content/10.1101/…
Benjamin Grodner retweeted
Want to extend your spatial transcriptomics measurements to include noncoding and/or non-host RNAs? Check out our method **Spatial Total RNA-Sequencing** (STRS) - out today in @NatureBiotech!
nature.com/articles/s41587-0…
Here's thread with updates since our preprint:
Benjamin Grodner retweeted
Do you wash raw chicken before cooking? Read this from Science News about ChickenSplash research conducted at the CBE #MontanaState
@WilkingLab @icatody @BenjaminGrodner bit.ly/ChickenSplash
Benjamin Grodner retweeted
Very excited to see our work on large-scale integration of skeletal muscle #scRNAseq data (now >365k cells/nuclei) finally published! Here's a quick thread on updates since our preprint last December... #myotwitter
nature.com/articles/s42003-0…
Benjamin Grodner retweeted
In his #MBM21 presentation, recent #MontanaState PhD graduate Reha Abbasi explored 3D printing when exploring cell-to-cell interactions in biofilms, antimicrobial resistance, and byproduct efficiency. #CBEfirst #WilkingLab
Benjamin Grodner retweeted
And, Michael Wang's paper is now also published! 🥳🎉If you are interested in single-cell genomics please go check it out. Michael developed a tool to perform single-cell analyses without the need for a comprehensive genome annotation. nature.com/articles/s41467-0…
Benjamin Grodner retweeted
Breaking from our normal focus on bacterial functions, my postdoc @SandraAriassu presents compelling ideas for how the biophysical forces of mucus contribute to biofilm formation in the gut. sciencedirect.com/science/ar… @CornellBME
Benjamin Grodner retweeted
Hot off .@MedCellPress!
#COVID19 POC work in our collaboration with .@DeVlaminckLab .@cfDNAlex & Jerry Ritz .@MatthewPCheng .@DanaFarber & others on new ways to measure organ injury using #cfDNA #methylation profiles—precision beyond O2 needs.
free link: cell.com/med/fulltext/S2666-…
Benjamin Grodner retweeted
Most are familiar with "liquid biopsy" for #cancer.
That for covid, not so much.
First report here using methylation of cell-free DNA to organ specific injury, level of cf-DNA correlates w/ disease progression
cell.com/med/fulltext/S2666-… @MedCellPress @DeVlaminckLab @cfDNAlex
Benjamin Grodner retweeted
Welcome to our newest @CornellBME @CornellEng faculty member, assistant professor Nate Cira, who is developing technologies to enable new scales of experimental throughput and using them to untangle complex biological systems! Learn more: bme.cornell.edu/spotlights/w…
Benjamin Grodner retweeted
A microscopic bow made of #biofilm adorns a tidy package of P. aeruginosa grown on a glass coupon in a CDC reactor. #HappyHolidays from the CBE! Confocal microscopy image captured by Lindsey Lorenz. Graphics courtesy of Jill Story. #beautifulbiofilm
Benjamin Grodner retweeted
"Cell-free DNA (cfDNA) and exosome profiling from a year-long human spaceflight reveals circulating biomarkers" showing a mtDNA biomarker for spaceflight, with @Daniela_Bezdan @cemmeydan @mjdmackay @danjbuts @tejaswini @LabMelnick and @DeVlaminckLab cell.com/iscience/fulltext/S… /9
Benjamin Grodner retweeted
Excited to share our new preprint! We integrated 100+ single-cell/nucleus RNAseq datasets (23 new!) to explore rare cell states in myogenesis. ~350k cells/nuclei and the first spatial RNAseq data in regenerating muscle! biorxiv.org/content/10.1101/…
Benjamin Grodner retweeted
Big congrats to @haoiseetheworld and all other co-authors @ilanabrito123, Warren Zipfel, @BenjaminGrodner. Thanks to @NIH NCI IMAT and DP2 programs for the support. @CornellEng @Cornell @CornellBME nature.com/articles/s41586-0…
Benjamin Grodner retweeted
As an academic, I work at an "institute of higher education" not an "institute of higher publication."
Research and publications are important. But, even more important is teaching students and mentoring researchers. We need a reward structure that reflects those priorities.
Benjamin Grodner retweeted
Really excited to see this project out on @biorxivpreprint! We've had lots of discussion about feature assignment and applications for annotation-free scRNAseq analysis. Great work from Michael and a fun collab between @DeVlaminckLab and @charlesdanko!
biorxiv.org/content/10.1101/…
Benjamin Grodner retweeted
Happy to share our latest preprint in which we report a liquid biopsy for COVID-19. We developed a blood test to broadly quantify cell, tissue, and organ specific injury due to COVID-19. medrxiv.org/content/10.1101/…
Benjamin Grodner retweeted
Huge congrats to @mantri_madhav and Guy Scuderi for pulling this off. Thanks @NIHFunding for the support. @Cornell, @CornellEng, @CornellBME.