🇳🇵🇦🇺 An evolving biologist | Bioinformatician @TheDohertyInst | PhD @lab_grant | Bioinformatics | Modelling | he/him

Melbourne, Victoria
Joined February 2016
This year, @ClarivateAG has recognised 11 researchers @TheDohertyInst as Highly Cited Researchers. They have demonstrated significant and broad influence in their research fields based on data and qualitative analysis from the ISI & Web of Science Core Collection. Explore the full list here -go.unimelb.edu.au/7398 #HighlyCited2024 @ClarivateAG @TheRMH @UniMelb @UniMelbMDHS
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Proud to see this paper from the lab out today @Nature showing how rifaximin use is driving dapto-R in VRE. Many years of work, great multi-disciplinary collaborations. Led by @adriannamturner and Glen Carter @TheDohertyInst @UniMelbMDHS @Austin_Health rdcu.be/dXUDt
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Are you interested in metagenomics? The Meta-GP Program are hosting a Symposium on 6 November to update on progress towards implementation of metagenomic next-generation sequencing across several Australia sites. Registration will close 1 November 👇 eventbrite.com.au/e/meta-gp-…
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Himal Shrestha retweeted
🔬 @limsltu scientists have discovered a new antibody-like molecule which could be used in therapy to prevent infection from multiple #malaria parasite species. brnw.ch/21wMoK9
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If academic articles were written by Youtubers: WE RAN A BUNCH OF REGRESSIONS AND YOU WOULDN'T BELIEVE WHAT HAPPENED NEXT...
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$ git push origin main --force
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I'm looking for a postdoc for my lab - Level A or B, full time or part time considered. Working on single cell transcriptomics and spatial data - methods and collaborative analysis. Really excellent compute available ;) tinyurl.com/y3e8dfke
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One of the reasons I've been quiet on Twitter for a few months is because I've been working on something big - something I'm really happy to share now! Pathoplexus.org A new, open-source database for pathogen sequence sharing. 👐🧬🌎 1/12
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Himal Shrestha retweeted
I had an opportunity to give a 5mins talk of findings from part of my PhD at Parasite in the Pacific Conference#PiP2024 in Auckland, New Zealand.#Aotearoa A great opportunity to meet amazing scientists in Parasitology and learning about some cool science and arts too.
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The Department of Health is investigating an outbreak of Legionnaires’ disease involving a significant increase in notified cases across metropolitan Melbourne & surrounding areas since Friday afternoon. To find out about symptoms & more information visit: go.vic.gov.au/3LJ6EYI
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Himal Shrestha retweeted
High quality researchers at low prices! Register now -> trybooking.com/events/124903… 🦠🧬
We are delighted to announce #MicroSeq2024's amazing plenary speakers @DrEmilyGulliver, @gerrythill, @erinehharvey and Syrie Hermans! They'll talk about agricultural and human microbiomes, virus emergence and Australian wildlife, and bioinformatic tool development. We can’t wait!
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I am excited to win a CZI EOSS grant! This is the first grant I have ever won after 20+ years in science. It feels wonderful to finally be funded for my open-source contributions. With @wytamma we will deliver the next generation of my popular Snippy software! 🦘🦘🦘 – at Melbourne, Victoria
Open source tools are crucial for biomedical research. We're collaborating with @KavliFoundation + @Wellcometrust to support developers & maintainers of critical #OpenSource projects, promoting innovation & community engagement in the field. More ▶️ czi.co/3zjN56l
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Himal Shrestha retweeted
Stoked to present our work at the 31st International Dynamics & Evolution of #HumanViruses meeting in beautiful Squamish, Canada 🍁 🦠
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Himal Shrestha retweeted
Our new pre-print is out on the gen-epi of invasive Group A Strep in Victoria #strepA We show not only the impacts of Covid-19 and the expansion of M1UK, but we found we had a previously dominant clone of M1 isolates (M1AUS). Check it out here papers.ssrn.com/sol3/papers.…
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Himal Shrestha retweeted
We are hosting the 10th World Melioidosis Congress this year in Darwin, Australia - 🗓️ 21-23 OCT 22. We have exciting things planned! Register here and submit your abstracts. #melioidosis #burkholderia @MenziesResearch wmc2024.org.au/
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Himal Shrestha retweeted
Kicking off the first Centre for Pathogen Genomics workshop @UniMelbMDHS @TheDohertyInst at the @GHS_conf 🇦🇺grateful to have this global platform to share some of our learnings and diverse expertise in the Asia Pacific region (and not being the jet lagged ones for once!)
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Himal Shrestha retweeted
Had the pleasure of presenting shigella genomics 🧬 work last week @AusPathoGen - we used a national collection of 5k sequences, identifying previously unidentified case clusters in Australia, unique clones to east vs central and northern Australia, MDR and XDR @_PHAA_
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Himal Shrestha retweeted
Release of the 2024 updated WHO priority pathogens - we should be aligning with this here in Australia - RR TB Newley added. The status of AMR in our Australian TB using a national dataset of 8k genomes will come out this year @AusPathoGen
Replying to @WHO
@WHO just releases the 2024 Bacterial Priority Pathogens List of public health importance to guide R&D, and investments in #AMR prevention and control in measures to address emerging public health threats. Full report: who.int/publications/i/item/…
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Himal Shrestha retweeted
At the inaugural @WHO Alliance for Food Safety meeting🍗🥬🐷Excited to be part of this global group from all sectors working in foodborne disease surveillance to discuss the impact #genomics has on detecting #AMR infections and investigating outbreaks🧬 @WHOCC_AMR @TheDohertyInst
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We are underway with the ACCELERATE project 👏 leprosy genomics in Nepal @BiratNepal @LEOFondet @TheDohertyInst @UniMelbMDHS
Dr. Maxine Caws introduces the “ACCELERATE" project - emphasizing the urgent need to expand and strengthen early case detection and treatment activities in Leprosy. The project is funded by @LeoFoundation in collaboration with @UniMelb Doherty Institute, @SarahJDunstan1.
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